Table 3 FSFs involved in capsid/coat assembly processes in viruses.

FSFs that are completely absent in cellular proteomes are presented in boldface. Several other FSFs also have negligible f values in cells.

SCOP IDSCOP cssFSF descriptionViral lineagef-value in cells
82856e.42.1L-A virus major coat proteinBTV-like0.00025
56831e.28.1Reovirus inner layer core protein p3BTV-like0.00019
48345a.115.1A virus capsid protein alpha-helical domainBTV-like0
56563d.183.1Major capsid protein gp5HK97-like0.2352
103417e.48.1Major capsid protein VP5HK97-like0.00006
88633b.121.4Positive stranded ssRNA virusesPicornavirus-like0.00364
88645b.121.5ssDNA virusesPicornavirus-like0.00099
88650b.121.7Satellite virusesPicornavirus-like0
88648b.121.6Group I dsDNA virusesPicornavirus-like0
49749b.121.2Group II dsDNA viruses VPPRD1/adenovirus-like0.00031
47353a.28.3Retrovirus capsid dimerization domain–likeOther/unclassified0.00407
47943a.73.1Retrovirus capsid protein, N-terminal core domainOther/unclassified0.00123
47195a.24.5TMV-like viral coat proteinsOther/unclassified0.00099
57987h.1.4Inovirus (filamentous phage) major coat proteinOther/unclassified0.00068
51274b.85.2Head decoration protein D (gpD, major capsid protein D)Other/unclassified0.00049
64465d.196.1Outer capsid protein sigma 3Other/unclassified0.00006
55405d.85.1RNA bacteriophage capsid proteinOther/unclassified0.00006
48045a.84.1Scaffolding protein gpD of bacteriophage procapsidOther/unclassified0
47852a.62.1Hepatitis B viral capsid (hbcag)Other/unclassified0
101257a.190.1Flavivirus capsid protein COther/unclassified0
50176b.37.1N-terminal domains of the minor coat protein g3pOther/unclassified0
103068d.254.1Nucleocapsid protein dimerization domainOther/unclassified0