Science Advances

Supplementary Materials

The PDF file includes:

  • Supplementary Materials and Methods
  • Fig. S1. CNON Hi-C datasets.
  • Fig. S2. Chromatin interactions with different q value cutoffs.
  • Fig. S3. H3K27ac ChIP-seq clustering results.
  • Fig. S4. NOMe-seq depth and number of NDRs.
  • Legends for tables S1 to S11
  • References (5567)

Download PDF

Other Supplementary Material for this manuscript includes the following:

  • Table S1 (Microsoft Excel format). Information about the CNON ChIP-seq, NOMe-seq, and Hi-C datasets.
  • Table S2 (Microsoft Excel format). CNON TADs identified by Hi-C.
  • Table S3 (Microsoft Excel format). CNON ChIP-seq peaks classified as promoters, enhancers, insulators, repressed, or heterochromatin regions.
  • Table S4 (Microsoft Excel format). CNON chromatin interactions identified by Hi-C.
  • Table S5 (Microsoft Excel format). Epigenomic classification of CNON Hi-C chromatin interactions.
  • Table S6 (Microsoft Excel format). Predicted target genes of enhancers using CNON Hi-C.
  • Table S7 (Microsoft Excel format). Coordinates of promoter H3K4me3, non-promoter H3K27ac, and CTCF peaks found in many individuals of CNON datasets.
  • Table S8 (Microsoft Excel format). Identification and classification of NDRs identified by CNON NOMe-seq.
  • Table S9 (Microsoft Excel format). Enhancers linked to genotype, gender, smoking status, and schizophrenia diagnosis.
  • Table S10 (Microsoft Excel format). Classification and characterization of SCZ risk-associated variants.
  • Table S11 (Microsoft Excel format). Predicted target genes of enhancers linked to individual variations.

Files in this Data Supplement: