Science Advances

Supplementary Materials

The PDF file includes:

  • Supplementary Text
  • Fig. S1. Maximum likelihood phylogeny of the MCAN group, including the most likely inferred ancestor of MTBC.
  • Fig. S2. Phylogenetic incongruence test.
  • Fig. S3. Recombination fragments ages derived from BEAST.
  • References (6163)

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Other Supplementary Material for this manuscript includes the following:

  • Table S1 (Microsoft Excel format). Variants identified as homoplastic and phylogenetically convergent.
  • Table S2 (Microsoft Excel format). Potential recombination fragments detected between the MTBC ancestor and MCAN.
  • Table S3 (Microsoft Excel format). Results of the phylogenetic comparison of genes having a significant accumulation of divSNPs.
  • Table S4 (Microsoft Excel format). Analysis of dN/dS variation between the MTBC ancestor and the MTBC.
  • Table S5 (Microsoft Excel format). Codons with strong evidence of being under positive selection as detected by FUBAR.
  • Table S6 (Microsoft Excel format). Variants found in the phoR gene.
  • Table S7 (Microsoft Excel format). Accession numbers and description of the MTBC strains analyzed.
  • Table S8 (Microsoft Excel format). Accession numbers of the mycobacterial genomes used to construct the reference phylogeny.

Files in this Data Supplement: