Science Advances

Supplementary Materials

The PDF file includes:

  • Fig. S1. Jojoba plants, flowers, and seed.
  • Fig. S2. The integrated annotation pipeline for the S. chinensis genome.
  • Fig. S3. Distribution of LTR insertion time of S. chinensis, S. oleracea, and B. vulgaris.
  • Fig. S4. Density distributions of the Ks values for homologous genes.
  • Fig. S5. Homologous gene dot plots.
  • Fig. S6. MRI-based quantitative imaging of lipid distributions in an intact mature seed of jojoba.
  • Fig. S7. NanoESI-MS/MS quantification of WE molecular species composition and content in jojoba cotyledon and embryonic axis tissues.
  • Fig. S8. UPLC-nanoESI-MS/MS quantification of TAG molecular composition in jojoba cotyledon and embryonic axis tissues.
  • Fig. S9. Transcriptome analysis of jojoba cotyledon and embryonic axis tissues.
  • Fig. S10. GO enrichment analysis of differentially expressed genes between jojoba cotyledon and embryonic axis tissues.
  • Legends for tables S1 to S21

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Other Supplementary Material for this manuscript includes the following:

  • Table S1 (Microsoft Excel format). Raw sequencing data.
  • Table S2 (Microsoft Excel format). Anchored chromosome lengths of the S. chinensis genome.
  • Table S3 (Microsoft Excel format). The statistics of Illumina reads mapped to the assembled genome.
  • Table S4 (Microsoft Excel format). Statistics of transposable elements within the S. chinensis genome.
  • Table S5 (Microsoft Excel format). Characterization of genes in the S. chinensis genome.
  • Table S6 (Microsoft Excel format). Gene functional annotation statistics.
  • Table S7 (Microsoft Excel format). Statistics of annotated noncoding RNAs.
  • Table S8 (Microsoft Excel format). Evaluation of assembly completeness with RNA-seq data.
  • Table S9 (Microsoft Excel format). Evaluation of assembly completeness with respect to genespace using CEGMA and BUSCO.
  • Table S10 (Microsoft Excel format). Summary of the peaks in Ks distribution of S. chinensis paralogs and orthologs.
  • Table S11 (Microsoft Excel format). The syntenic blocks detected by MCScanX.
  • Table S12 (Microsoft Excel format). Orthology of protein-coding genes among 16 plants.
  • Table S13 (Microsoft Excel format). Statistics of OrthoMCL analysis.
  • Table S14 (Microsoft Excel format). Differential expression analysis between cotyledon and embryonic axis tissues.
  • Table S15 (Microsoft Excel format). GO enrichment analysis of differentially expressed genes between cotyledon and embryonic axis tissues.
  • Table S16 (Microsoft Excel format). Gene expression in different stages of a developing seed.
  • Table S17 (Microsoft Excel format). Gene expression in different tissues of a developing seed.
  • Table S18 (Microsoft Excel format). Filtered list of MS peptide counts from known and candidate cotyledon LD proteins.
  • Table S19 (Microsoft Excel format). Filtered list of MS peptide counts from known and candidate embryonic axis LD proteins.
  • Table S20 (Microsoft Excel format). Normalized peptide counts from different cellular fractions of jojoba developing cotyledon tissues.
  • Table S21 (Microsoft Excel format). Normalized peptide counts from different cellular fractions of jojoba developing embryonic axis tissues.

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