Nudiviral genes of unknown function are detailed in table S1. RPKM, number of Illumina reads per kilobase per million mapped reads. PSM, number of peptide spectrum matches.
| Protein putative function | Gene name | Transcript abundance (RPKM) | Peptide abundance (PSM) | OrNV homolog | Accession number | BLASTp e value |
| Nudiviral genes encoding VLP components | ||||||
| Envelope component | pif-0 (p74) | 12,900 | 54 | P74 protein (OrNV_gp126) | YP_002321437 | 1.0 × 10−85 |
| pif-1 | 5,196 | 28 | PIF-1 (OrNV_gp060) | YP_002321371 | 2.0 × 10−94 | |
| pif-2 | 1,980 | 34 | PIF-2 (OrNV_gp017) | YP_002321328 | 9.8 × 10−112 | |
| pif-3 | 2,655 | 12 | PIF-3 (OrNV_gp107) | YP_002321418 | 2.0 × 10−59 | |
| pif-4 | 7,731 | 5 | 19-kDa protein (OrNV_gp033) | YP_002321344 | 5.0 × 10−44 | |
| pif-5-1 | 527 | 5 | ODV-E56 (OrNV_gp115) | YP_002321426 | 1.0 × 10−34 | |
| pif-5-2 | 863 | 21 | ODV-E56 (OrNV_gp115) | YP_002321426 | 4.8 × 10−38 | |
| pif-5-3 | 1,048 | 9 | ODV-E56 (OrNV_gp115) | YP_002321426 | 1.6 × 10−29 | |
| pif-6 | 3,011 | 2 | Ac68-like (OrNV_gp072) | YP_002321383 | 4.0 × 10−40 | |
| vp91 | 2,966 | 23 | VP91 (OrNV_gp106) | YP_002321417 | 1.4 × 10−84 | |
| p33 | 5,553 | 5 | Ac92-like (OrNV_gp113) | YP_002321424 | 8.6 × 10−48 | |
| Unknown | 15 other genes related to OrNV | |||||
| V. canescens genes encoding VLP components | ||||||
| Virulence | PHGPx VLP1 | 1,115 | 134 | |||
| RhoGAP VLP2 | 23,134 | 400 | ||||
| Neprylisin VLP3 | 3,540 | 138 | ||||
| Nudiviral genes transcribed in VLP-producing tissue not encoding VLP components | ||||||
| Replication | Helicase | 27 | — | DNAHEL (OrNV_gp034) | YP_002321345 | 0.0 |
| Transcription | RNA polymerase lef-4 | 488 | — | LEF-4 (OrNV_gp042) | YP_002321353 | 2.8 × 10−92 |
| RNA polymerase lef-8 | 125 | — | LEF-8 (OrNV_gp064) | YP_002321375 | 0.0 | |
| RNA polymerase lef-9 | 724 | — | LEF-9 (OrNV_gp096) | YP_002321407 | 0.0 | |
| RNA polymerase p47 | 916 | — | P47 (OrNV_gp020) | YP_002321331 | 1.6 × 10−97 | |
| Initiation factor lef-5 | 245 | — | LEF-5 (OrNV_gp052) | YP_002321363 | 5.5 × 10−18 | |
| Envelope component | pif-5-4 | 2,286 | — | ODV-E56 (OrNV_gp115) | YP_002321426 | 9.1 × 10−22 |
| Ac81-1 | 272 | — | Ac81-like protein (OrNV_gp004) | YP_002321315 | 2.0 × 10−34 | |
| Ac81-2 | 1,777 | — | Ac81-like protein (OrNV_gp004) | YP_002321315 | 1.0 × 10−39 | |
| Ac81-3 | 1,080 | — | Ac81-like protein (OrNV_gp004) | YP_002321315 | 9.3 × 10−34 | |
| Unknown | 18 other genes related to OrNV | |||||