Table 2 Annotations statistics.

CNE, conserved noncoding element (i.e., potential enhancers/promoters); GO, gene ontology.

GoldfishCommon carpZebrafish
(danRer10)
Assembly size
(bp)
1,820,635,0511,713,641,4361,371,719,383
GC content37.48%36.99%36.64%
Repeats (bp)721,087,053 (39.6%)672,246,354 (39.2%)745,150,642
(54.3%)
Protein-coding
genes
70,32466,99925,600
(Ensembl
release 85)
Genes with GO49,27218,779*
Exons556,731547,164276,021
Genes with
InterPro
49,27244,845*24,204*
miRNA1,037769
ncRNA
(noncoding
RNA)
11,820
4-way CNE
counts
486,767484,139*237,891*
4-way CNE bp95,815,23397,818,440*44,090,004*
Missing
BUSCOs (of
3023)
167330*0 (used for original BUSCO set)

*Data generated from this study.