Table 2 Effect on singleton site pattern frequencies of gene flow (mδ) from superarchaics into neandersovans.

Column 2 shows expected frequencies of singleton site patterns in a model in which mδ = 0, and all other parameters are as fitted under model αβγδ. In column 3, all parameters including mδ are as fitted under this model. Column 4 is obtained by subtracting column 2 from column 3. Expected site pattern frequencies were estimated using legosim with 107 iterations.

Site patternFrequency
mδ = 0mδ = 0.034Difference
x0.155830.15174−0.00409
y0.151760.14778−0.00398
v0.049740.04942−0.00032
a0.037950.037980.00003
d0.160510.164440.00393